Variant report

Variant	rs17067117
Chromosome Location	chr6:106946212-106946213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17067108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60357036	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60849265	0.91[EUR][1000 genomes]
rs6919039	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73515121	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs783407	0.81[EUR][1000 genomes]
rs783409	0.84[EUR][1000 genomes]
rs9480675	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106943600-106955600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:106945200-106948400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:106945400-106949800	Weak transcription	Placenta	Placenta
4	chr6:106945400-106949800	Weak transcription	Lung	lung
5	chr6:106945400-106949800	Weak transcription	Pancreas	Pancrea
6	chr6:106945600-106946400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:106945600-106946400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:106945600-106947800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:106945600-106948600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:106945600-106949000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:106945600-106950000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:106945600-106950800	Weak transcription	Esophagus	oesophagus
13	chr6:106945600-106957600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:106945800-106948800	Weak transcription	NHEK	skin
15	chr6:106945800-106949000	Weak transcription	HMEC	breast
16	chr6:106946200-106946400	Enhancers	Fetal Intestine Large	intestine
17	chr6:106946200-106948400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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