Variant report

Variant	rs6919039
Chromosome Location	chr6:106944173-106944174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17067108	0.98[ASN][1000 genomes]
rs17067117	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60357036	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73515121	0.98[ASN][1000 genomes]
rs9480675	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106937200-106944800	Weak transcription	Esophagus	oesophagus
2	chr6:106938600-106944600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:106938800-106944600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:106942600-106945600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:106942800-106944600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:106943200-106944600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:106943200-106944600	Weak transcription	HMEC	breast
8	chr6:106943200-106945200	Weak transcription	Pancreas	Pancrea
9	chr6:106943400-106944600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:106943400-106944600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:106943400-106944800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:106943400-106945000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:106943600-106944600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:106943600-106944600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:106943600-106944600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:106943600-106944800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:106943600-106955600	Weak transcription	Fetal Intestine Small	intestine
18	chr6:106944000-106944200	Active TSS	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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