Variant report

Variant	rs17069079
Chromosome Location	chr6:139947597-139947598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139926929..139929579-chr6:139947168..139949800,3	K562	blood:
2	chr6:139694364..139697265-chr6:139946900..139948986,2	K562	blood:
3	chr6:139693949..139699229-chr6:139943197..139952021,15	K562	blood:
4	chr6:139933085..139934923-chr6:139946118..139948302,2	K562	blood:
5	chr6:139946371..139948885-chr6:139954792..139957016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1124117	1.00[AMR][1000 genomes]
rs1124118	1.00[AMR][1000 genomes]
rs17069343	1.00[AMR][1000 genomes]
rs1936206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4275075	1.00[AMR][1000 genomes]
rs764214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757588	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139944800-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139946000-139948200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:139946200-139948800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:139946200-139949200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:139946200-139949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:139946400-139947600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:139946400-139947800	Enhancers	Spleen	Spleen
8	chr6:139946400-139948600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:139946600-139947600	Weak transcription	HepG2	liver
10	chr6:139946600-139948800	Enhancers	Fetal Kidney	kidney
11	chr6:139946600-139955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:139946800-139947600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:139946800-139947600	Enhancers	Adipose Nuclei	Adipose
14	chr6:139946800-139948000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr6:139946800-139948200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr6:139946800-139949000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:139946800-139949600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:139946800-139950000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:139947000-139947600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:139947000-139947600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:139947000-139949200	Enhancers	K562	blood
22	chr6:139947200-139947600	Enhancers	Fetal Brain Male	brain
23	chr6:139947200-139948000	Active TSS	Primary B cells from cord blood	blood
24	chr6:139947200-139948400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:139947200-139948600	Enhancers	Fetal Lung	lung
26	chr6:139947400-139947600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr6:139947400-139947600	Enhancers	Liver	Liver
28	chr6:139947400-139947800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:139947400-139948000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr6:139947400-139948000	Enhancers	HUVEC	blood vessel
31	chr6:139947400-139948200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:139947400-139948600	Enhancers	Brain Substantia Nigra	brain
33	chr6:139947400-139948800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:139947400-139949200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr6:139947400-139949400	Enhancers	Fetal Stomach	stomach
36	chr6:139947400-139949600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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