Variant report

Variant	rs4275075
Chromosome Location	chr6:139914225-139914226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139691841..139699576-chr6:139900868..139917289,34	MCF-7	breast:
2	chr6:139914136..139915805-chr6:139921173..139922763,2	K562	blood:
3	chr6:139911361..139914262-chr6:139921239..139923809,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10080595	0.89[YRI][hapmap]
rs1124117	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1124118	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17069079	1.00[AMR][1000 genomes]
rs1936206	1.00[AMR][1000 genomes]
rs764214	1.00[AMR][1000 genomes]
rs7757588	1.00[AMR][1000 genomes]
rs9495533	0.89[YRI][hapmap]
rs9495534	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:139907200-139919800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:139907600-139918400	Weak transcription	Fetal Brain Male	brain
4	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
5	chr6:139908800-139914400	Enhancers	Fetal Intestine Large	intestine
6	chr6:139908800-139920600	Enhancers	Fetal Intestine Small	intestine
7	chr6:139909400-139915600	Weak transcription	Esophagus	oesophagus
8	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:139909600-139918800	Weak transcription	Left Ventricle	heart
10	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:139909800-139916000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:139909800-139916600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:139910000-139918000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:139910000-139918800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:139910200-139916200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:139910200-139917800	Weak transcription	HMEC	breast
17	chr6:139910200-139918400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:139910400-139917600	Weak transcription	NH-A	brain
19	chr6:139910600-139915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:139910600-139916000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:139910600-139918400	Weak transcription	A549	lung
22	chr6:139910800-139914400	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:139910800-139917600	Weak transcription	Osteobl	bone
24	chr6:139910800-139918400	Weak transcription	Fetal Lung	lung
25	chr6:139911200-139914400	Enhancers	Stomach Mucosa	stomach
26	chr6:139911200-139918000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:139912400-139915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:139912600-139915800	Weak transcription	HepG2	liver
29	chr6:139913000-139915600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:139913000-139916200	Weak transcription	NHDF-Ad	bronchial
31	chr6:139913000-139917800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:139913000-139918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:139913000-139918400	Weak transcription	Liver	Liver
34	chr6:139913000-139918800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:139913000-139928600	Weak transcription	Ovary	ovary
36	chr6:139913200-139914400	Enhancers	HUVEC	blood vessel
37	chr6:139913200-139914600	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:139913200-139916600	Weak transcription	Fetal Heart	heart
39	chr6:139913200-139918400	Weak transcription	HSMMtube	muscle
40	chr6:139913400-139916200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:139913400-139916200	Weak transcription	HSMM	muscle
42	chr6:139913400-139918000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:139913600-139916000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:139913600-139918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:139913600-139919200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:139913800-139914400	Enhancers	Pancreas	Pancrea
47	chr6:139913800-139914400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:139913800-139914400	Enhancers	Spleen	Spleen
49	chr6:139913800-139915000	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:139913800-139915800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links