Variant report

Variant	rs17069798
Chromosome Location	chr5:167501012-167501013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2033464	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3097824	0.80[CHB][hapmap]
rs9313396	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
2	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167498600-167501600	Strong transcription	NHEK	skin
5	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167500400-167501800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167500600-167501400	Enhancers	NH-A	brain
8	chr5:167500600-167501600	Enhancers	HSMM	muscle
9	chr5:167500600-167501600	Enhancers	HSMMtube	muscle
10	chr5:167500600-167504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167500800-167501200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:167500800-167501400	Enhancers	Osteobl	bone
13	chr5:167500800-167501600	Enhancers	Dnd41	blood
14	chr5:167500800-167501800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167500800-167501800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:167500800-167501800	Enhancers	Fetal Muscle Leg	muscle
17	chr5:167500800-167501800	Genic enhancers	Left Ventricle	heart
18	chr5:167500800-167501800	Enhancers	Right Ventricle	heart
19	chr5:167500800-167502000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:167500800-167502000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:167500800-167502600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr5:167501000-167501800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr5:167501000-167501800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:167501000-167512800	Weak transcription	Placenta Amnion	Placenta Amnion

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