Variant report

Variant	rs9313396
Chromosome Location	chr5:167499832-167499833
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17069798	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033464	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9313396	CMIP	trans	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
3	chr5:167491800-167500600	Weak transcription	HSMM	muscle
4	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167492000-167500600	Weak transcription	NH-A	brain
6	chr5:167495400-167500800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167495400-167500800	Weak transcription	Right Ventricle	heart
8	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167498600-167501600	Strong transcription	NHEK	skin
10	chr5:167499000-167500400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:167499000-167500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:167499400-167500400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:167499800-167500000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:167499800-167500000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr5:167499800-167500200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:167499800-167500800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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