Variant report

Variant	rs17070005
Chromosome Location	chr5:167641067-167641068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2173018	0.95[GIH][hapmap]
rs2291784	0.95[GIH][hapmap]
rs6875022	0.81[CEU][hapmap]
rs6876382	0.89[GIH][hapmap]
rs6897788	0.89[GIH][hapmap]
rs6898935	0.95[GIH][hapmap]
rs7714057	0.81[CHD][hapmap]
rs7735069	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv600256	chr5:167622914-167643545	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
2	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
3	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
4	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:167624600-167646600	Weak transcription	Liver	Liver
6	chr5:167630200-167643000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:167631200-167643400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:167634600-167643200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167634800-167646400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:167635200-167645200	Weak transcription	HMEC	breast
11	chr5:167635200-167645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167635200-167646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167636400-167646600	Strong transcription	NHEK	skin
14	chr5:167636800-167642200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167637000-167642000	Weak transcription	HSMM	muscle
16	chr5:167637000-167645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:167637000-167646200	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:167637200-167642000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:167637200-167644600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:167637200-167646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:167637200-167646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:167637200-167646400	Weak transcription	Brain Angular Gyrus	brain
23	chr5:167637200-167646400	Weak transcription	Brain Anterior Caudate	brain
24	chr5:167637200-167646400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:167637200-167646600	Weak transcription	Fetal Brain Male	brain
26	chr5:167637200-167646600	Weak transcription	NH-A	brain
27	chr5:167637400-167641200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:167637400-167642800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:167637800-167646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:167639000-167646400	Weak transcription	Fetal Lung	lung
31	chr5:167639400-167646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:167639400-167653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:167639600-167643400	Strong transcription	Left Ventricle	heart
34	chr5:167640800-167644200	Strong transcription	Right Ventricle	heart

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