Variant report

Variant	rs6875022
Chromosome Location	chr5:167640282-167640283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167638699..167640439-chr5:167642753..167644819,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10041718	0.93[CEU][hapmap];0.83[CHB][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17069979	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070005	0.81[CEU][hapmap]
rs17731087	0.94[CHB][hapmap];0.92[ASN][1000 genomes]
rs2173018	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291784	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57141803	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57355184	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6880386	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs6892072	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6898935	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv600256	chr5:167622914-167643545	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
2	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
3	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
4	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:167624600-167646600	Weak transcription	Liver	Liver
6	chr5:167630200-167643000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:167631200-167643400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:167631800-167640800	Weak transcription	Right Ventricle	heart
9	chr5:167634600-167643200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:167634800-167646400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:167635200-167645200	Weak transcription	HMEC	breast
12	chr5:167635200-167645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:167635200-167646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:167636400-167646600	Strong transcription	NHEK	skin
15	chr5:167636800-167642200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:167637000-167642000	Weak transcription	HSMM	muscle
17	chr5:167637000-167645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:167637000-167646200	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:167637200-167642000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:167637200-167644600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:167637200-167646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:167637200-167646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:167637200-167646400	Weak transcription	Brain Angular Gyrus	brain
24	chr5:167637200-167646400	Weak transcription	Brain Anterior Caudate	brain
25	chr5:167637200-167646400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:167637200-167646600	Weak transcription	Fetal Brain Male	brain
27	chr5:167637200-167646600	Weak transcription	NH-A	brain
28	chr5:167637400-167641200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:167637400-167642800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:167637800-167646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:167639000-167646400	Weak transcription	Fetal Lung	lung
32	chr5:167639400-167646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:167639400-167653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:167639600-167643400	Strong transcription	Left Ventricle	heart

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