Variant report

Variant	rs6880386
Chromosome Location	chr5:167642834-167642835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167638699..167640439-chr5:167642753..167644819,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10041718	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069979	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs17731087	0.93[YRI][hapmap];0.81[AMR][1000 genomes]
rs2173018	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs2291784	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57141803	0.95[EUR][1000 genomes]
rs57355184	0.86[EUR][1000 genomes]
rs6875022	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs6876382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6892072	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6897788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6898935	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv600256	chr5:167622914-167643545	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
2	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
3	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
4	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:167624600-167646600	Weak transcription	Liver	Liver
6	chr5:167630200-167643000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:167631200-167643400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:167634600-167643200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167634800-167646400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:167635200-167645200	Weak transcription	HMEC	breast
11	chr5:167635200-167645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167635200-167646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167636400-167646600	Strong transcription	NHEK	skin
14	chr5:167637000-167645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:167637000-167646200	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:167637200-167644600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:167637200-167646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:167637200-167646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:167637200-167646400	Weak transcription	Brain Angular Gyrus	brain
20	chr5:167637200-167646400	Weak transcription	Brain Anterior Caudate	brain
21	chr5:167637200-167646400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:167637200-167646600	Weak transcription	Fetal Brain Male	brain
23	chr5:167637200-167646600	Weak transcription	NH-A	brain
24	chr5:167637800-167646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:167639000-167646400	Weak transcription	Fetal Lung	lung
26	chr5:167639400-167646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:167639400-167653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:167639600-167643400	Strong transcription	Left Ventricle	heart
29	chr5:167640800-167644200	Strong transcription	Right Ventricle	heart
30	chr5:167641200-167646600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:167642000-167643000	Strong transcription	HSMM	muscle
32	chr5:167642000-167646200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:167642200-167643400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:167642200-167644000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr5:167642600-167644000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr5:167642800-167643200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:167642800-167643400	Enhancers	Primary hematopoietic stem cells	blood
38	chr5:167642800-167643400	Enhancers	Small Intestine	intestine
39	chr5:167642800-167643600	Enhancers	HUVEC	blood vessel
40	chr5:167642800-167643800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:167642800-167643800	Enhancers	Adipose Nuclei	Adipose
42	chr5:167642800-167644000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr5:167642800-167644000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr5:167642800-167644000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:167642800-167644000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:167642800-167644400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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