Variant report

Variant	rs17070159
Chromosome Location	chr8:4266306-4266307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11775580	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776084	1.00[ASN][1000 genomes]
rs11786224	1.00[ASN][1000 genomes]
rs1238884	1.00[ASN][1000 genomes]
rs13248121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253200	1.00[ASN][1000 genomes]
rs13254643	1.00[ASN][1000 genomes]
rs13256245	1.00[ASN][1000 genomes]
rs13266336	1.00[ASN][1000 genomes]
rs13269988	1.00[ASN][1000 genomes]
rs13270130	1.00[ASN][1000 genomes]
rs13275996	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276921	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs13276932	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277788	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277882	1.00[ASN][1000 genomes]
rs13278683	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278892	1.00[ASN][1000 genomes]
rs13279785	1.00[ASN][1000 genomes]
rs13280088	1.00[ASN][1000 genomes]
rs13281118	1.00[ASN][1000 genomes]
rs13281925	1.00[ASN][1000 genomes]
rs34021491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34325842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551084	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34697055	1.00[ASN][1000 genomes]
rs35237554	1.00[ASN][1000 genomes]
rs35472613	1.00[ASN][1000 genomes]
rs35589069	1.00[ASN][1000 genomes]
rs62480980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480981	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480996	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480997	1.00[ASN][1000 genomes]
rs71523630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1024044	chr8:4207974-4272847	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2752255	chr8:4226976-4328216	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv889949	chr8:4246903-4302217	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1024293	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv539385	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv465376	chr8:4258091-4272581	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv609847	chr8:4258091-4272581	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs17070159	CCL20	trans	lymphoblastoid	seeQTL
rs17070159	RIN2	trans	lymphoblastoid	seeQTL
rs17070159	SIRPG	trans	lymphoblastoid	seeQTL
rs17070159	SERPINB2	trans	lymphoblastoid	seeQTL
rs17070159	NMNAT2	trans	lymphoblastoid	seeQTL
rs17070159	IL13RA1	trans	lymphoblastoid	seeQTL
rs17070159	CR2	trans	lymphoblastoid	seeQTL
rs17070159	PHGDH	trans	lymphoblastoid	seeQTL
rs17070159	CXCL9	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4265800-4274600	Weak transcription	Fetal Brain Male	brain

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