Variant report

Variant	rs13269988
Chromosome Location	chr8:4199162-4199163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11775580	1.00[ASN][1000 genomes]
rs11786224	1.00[ASN][1000 genomes]
rs13248121	1.00[ASN][1000 genomes]
rs13253064	1.00[ASN][1000 genomes]
rs13253200	1.00[ASN][1000 genomes]
rs13254643	1.00[ASN][1000 genomes]
rs13254850	1.00[CEU][hapmap]
rs13256245	1.00[ASN][1000 genomes]
rs13266336	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13270130	1.00[ASN][1000 genomes]
rs13270278	1.00[CEU][hapmap]
rs13275996	1.00[ASN][1000 genomes]
rs13276921	1.00[ASN][1000 genomes]
rs13276932	1.00[ASN][1000 genomes]
rs13277882	1.00[ASN][1000 genomes]
rs13278683	1.00[ASN][1000 genomes]
rs13278892	1.00[ASN][1000 genomes]
rs13279785	1.00[ASN][1000 genomes]
rs13280088	1.00[ASN][1000 genomes]
rs13281118	1.00[ASN][1000 genomes]
rs13281925	1.00[ASN][1000 genomes]
rs17070159	1.00[ASN][1000 genomes]
rs1995536	1.00[ASN][1000 genomes]
rs34021491	1.00[ASN][1000 genomes]
rs34325842	1.00[ASN][1000 genomes]
rs34551084	1.00[ASN][1000 genomes]
rs34697055	1.00[ASN][1000 genomes]
rs35237554	1.00[ASN][1000 genomes]
rs35472613	1.00[ASN][1000 genomes]
rs35589069	1.00[ASN][1000 genomes]
rs35993808	1.00[ASN][1000 genomes]
rs62480980	1.00[ASN][1000 genomes]
rs62480981	1.00[ASN][1000 genomes]
rs7828753	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4190000-4199600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:4194200-4202600	Weak transcription	Pancreas	Pancrea
3	chr8:4194800-4202600	Weak transcription	Gastric	stomach
4	chr8:4195200-4199200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:4198200-4199800	Weak transcription	Stomach Mucosa	stomach
6	chr8:4198800-4199200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr8:4199000-4199800	Enhancers	Fetal Brain Female	brain
8	chr8:4199000-4200600	Enhancers	Dnd41	blood

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