Variant report

Variant	rs35993808
Chromosome Location	chr8:4189932-4189933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13253200	1.00[ASN][1000 genomes]
rs13254643	1.00[ASN][1000 genomes]
rs13256245	1.00[ASN][1000 genomes]
rs13266336	1.00[ASN][1000 genomes]
rs13269988	1.00[ASN][1000 genomes]
rs13270130	1.00[ASN][1000 genomes]
rs13275996	1.00[ASN][1000 genomes]
rs13277882	1.00[ASN][1000 genomes]
rs13278892	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13279785	1.00[ASN][1000 genomes]
rs13280088	1.00[ASN][1000 genomes]
rs13281118	1.00[ASN][1000 genomes]
rs13281925	1.00[ASN][1000 genomes]
rs1995536	1.00[ASN][1000 genomes]
rs34021491	1.00[ASN][1000 genomes]
rs34325842	1.00[ASN][1000 genomes]
rs34697055	1.00[ASN][1000 genomes]
rs35237554	1.00[ASN][1000 genomes]
rs35472613	1.00[ASN][1000 genomes]
rs35589069	1.00[ASN][1000 genomes]
rs71523621	1.00[ASN][1000 genomes]
rs7828753	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv889946	chr8:4185227-4192206	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv438021	chr8:4185750-4196180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4188200-4190000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:4188200-4190000	Enhancers	Brain Germinal Matrix	brain
3	chr8:4188400-4190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:4188400-4190000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:4188400-4190000	Enhancers	Stomach Mucosa	stomach
6	chr8:4188600-4190000	Enhancers	Brain Anterior Caudate	brain
7	chr8:4188800-4190000	Enhancers	Brain Angular Gyrus	brain
8	chr8:4188800-4190000	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:4188800-4190200	Enhancers	Pancreas	Pancrea
10	chr8:4189400-4191400	Enhancers	Liver	Liver
11	chr8:4189600-4190000	Enhancers	Fetal Intestine Small	intestine
12	chr8:4189800-4190000	Enhancers	Gastric	stomach
13	chr8:4189800-4190000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr8:4189800-4190000	Enhancers	Small Intestine	intestine
15	chr8:4189800-4190200	Enhancers	Fetal Brain Male	brain
16	chr8:4189800-4194400	Weak transcription	Fetal Intestine Large	intestine
17	chr8:4189800-4195400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links