Variant report

Variant	rs17070989
Chromosome Location	chr6:141899337-141899338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12190658	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12195677	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12195698	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12208890	0.92[EUR][1000 genomes]
rs1338103	0.92[EUR][1000 genomes]
rs1338105	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17178527	0.87[EUR][1000 genomes]
rs1933284	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73777235	0.92[EUR][1000 genomes]
rs7740047	0.92[EUR][1000 genomes]
rs7740462	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751760	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755765	0.92[EUR][1000 genomes]
rs9484533	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9484541	0.92[EUR][1000 genomes]
rs9496087	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496093	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496098	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141898200-141901600	Weak transcription	NHDF-Ad	bronchial
2	chr6:141898800-141901400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:141899200-141899600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:141899200-141899800	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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