Variant report

Variant	rs9496098
Chromosome Location	chr6:141928791-141928792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11155199	0.81[EUR][1000 genomes]
rs12190658	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12195677	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12195698	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12198661	0.81[EUR][1000 genomes]
rs12208890	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1338103	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1338105	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070989	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17178527	0.85[EUR][1000 genomes]
rs1933284	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095732	0.85[ASN][1000 genomes]
rs57437386	0.81[EUR][1000 genomes]
rs73777235	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7740047	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7740462	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751760	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755765	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9484533	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484541	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9496087	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496093	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1025706	chr6:141909953-142131906	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538456	chr6:141909953-142131906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141926400-141928800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:141928600-141929400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links