Variant report

Variant	rs17071325
Chromosome Location	chr6:110563735-110563736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110563724..110566253-chr6:110569811..110571861,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11753534	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11758244	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071351	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071358	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2334322	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41288578	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41288582	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4612198	0.88[ASN][1000 genomes]
rs4945852	0.96[ASN][1000 genomes]
rs4947059	0.96[ASN][1000 genomes]
rs4947060	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55649499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55692748	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55827800	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55868300	0.94[ASN][1000 genomes]
rs55927920	0.96[ASN][1000 genomes]
rs55956228	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56112056	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56197201	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56222826	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56398409	0.96[ASN][1000 genomes]
rs6909242	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934170	0.94[ASN][1000 genomes]
rs73765688	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746681	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749663	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7766757	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7766850	0.84[AMR][1000 genomes]
rs9481045	0.81[AMR][1000 genomes]
rs9481047	0.81[AMR][1000 genomes]
rs9481048	0.88[AMR][1000 genomes]
rs9481050	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487317	0.81[AMR][1000 genomes]
rs9487318	0.81[AMR][1000 genomes]
rs9487319	0.81[AMR][1000 genomes]
rs9487321	0.88[AMR][1000 genomes]
rs9487325	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487327	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487331	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487333	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487334	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487335	0.94[ASN][1000 genomes]
rs9487336	0.94[ASN][1000 genomes]
rs9487337	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv1801843	chr6:110506109-110566328	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110539000-110580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:110540000-110567000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:110541200-110567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:110544600-110566400	Weak transcription	Fetal Stomach	stomach
5	chr6:110547000-110576600	Weak transcription	Pancreas	Pancrea
6	chr6:110549000-110567400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:110549400-110580400	Weak transcription	Brain Angular Gyrus	brain
8	chr6:110549600-110568600	Weak transcription	Left Ventricle	heart
9	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
10	chr6:110550800-110566400	Weak transcription	Ovary	ovary
11	chr6:110550800-110567200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:110551400-110567200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:110554000-110571400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:110554400-110572600	Weak transcription	Aorta	Aorta
15	chr6:110555400-110564800	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:110555400-110568400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:110555400-110570800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:110555600-110568600	Weak transcription	Brain Anterior Caudate	brain
19	chr6:110555600-110570000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:110555800-110568000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:110556000-110565600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:110556000-110571400	Weak transcription	Primary T cells from cord blood	blood
23	chr6:110557600-110568200	Weak transcription	Fetal Lung	lung
24	chr6:110557800-110570600	Weak transcription	Primary B cells from cord blood	blood
25	chr6:110559000-110564600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:110559200-110572400	Weak transcription	Liver	Liver
27	chr6:110559400-110571200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:110559400-110572800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:110559400-110573400	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:110559800-110565800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:110561200-110566400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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