Variant report

Variant	rs41288582
Chromosome Location	chr6:110575817-110575818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11753534	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11758244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071325	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071330	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071358	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2334322	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41288578	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4612198	0.92[ASN][1000 genomes]
rs4945852	1.00[ASN][1000 genomes]
rs4947059	1.00[ASN][1000 genomes]
rs4947060	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55649499	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55692748	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55827800	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55868300	0.98[ASN][1000 genomes]
rs55927920	1.00[ASN][1000 genomes]
rs55956228	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56112056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56197201	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398409	1.00[ASN][1000 genomes]
rs61497634	0.83[ASN][1000 genomes]
rs6909242	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6934170	0.98[ASN][1000 genomes]
rs73765688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746681	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749663	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766757	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766850	0.83[AMR][1000 genomes]
rs9481048	0.86[AMR][1000 genomes]
rs9481050	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487321	0.86[AMR][1000 genomes]
rs9487325	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487327	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487331	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487333	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487334	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487335	0.98[ASN][1000 genomes]
rs9487336	0.98[ASN][1000 genomes]
rs9487337	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110539000-110580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:110547000-110576600	Weak transcription	Pancreas	Pancrea
3	chr6:110549400-110580400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
5	chr6:110567400-110604600	Weak transcription	Ovary	ovary
6	chr6:110567600-110604600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:110571600-110576400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:110573600-110604600	Weak transcription	Aorta	Aorta
9	chr6:110574600-110576400	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links