Variant report

Variant	rs17071466
Chromosome Location	chr13:48774778-48774779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11839064	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1359861	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1752134	0.83[ASN][1000 genomes]
rs1854177	0.91[ASN][1000 genomes]
rs2406803	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765076	0.91[ASN][1000 genomes]
rs35537731	0.91[ASN][1000 genomes]
rs3890027	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4500616	0.91[ASN][1000 genomes]
rs4942755	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4942756	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551034	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56762281	0.93[ASN][1000 genomes]
rs637390	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs637831	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7318104	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7322824	0.96[ASN][1000 genomes]
rs73485008	0.91[ASN][1000 genomes]
rs7981621	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7982500	0.91[ASN][1000 genomes]
rs7984127	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7987321	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988173	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7988389	0.87[ASN][1000 genomes]
rs7994451	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7998964	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000847	0.91[ASN][1000 genomes]
rs9526458	0.88[ASN][1000 genomes]
rs9526459	0.91[ASN][1000 genomes]
rs9534981	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9534986	0.96[ASN][1000 genomes]
rs9534995	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591144	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591146	1.00[ASN][1000 genomes]
rs9595871	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3327569	chr13:48743550-48798094	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv1031	chr13:48766510-48790172	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48769400-48775400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr13:48773000-48775000	Enhancers	HepG2	liver
3	chr13:48773600-48775800	Enhancers	Fetal Intestine Large	intestine
4	chr13:48773600-48775800	Enhancers	Fetal Intestine Small	intestine
5	chr13:48773600-48775800	Enhancers	Stomach Mucosa	stomach
6	chr13:48774200-48775600	Enhancers	Gastric	stomach
7	chr13:48774600-48775800	Enhancers	Duodenum Mucosa	Duodenum

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