Variant report

Variant	rs9526458
Chromosome Location	chr13:48740171-48740172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48730571..48732164-chr13:48738258..48740910,2	K562	blood:
2	chr13:48738757..48741557-chr13:48751933..48753971,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11839064	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1359861	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17071466	0.88[ASN][1000 genomes]
rs1752134	0.89[ASN][1000 genomes]
rs1854177	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2406803	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2765076	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35537731	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3890027	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4500616	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942755	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4942756	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942758	0.88[ASN][1000 genomes]
rs551034	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56762281	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs637390	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs637831	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7318104	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7322824	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73485008	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7981621	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7982500	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7984127	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7987321	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7988173	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994451	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7998964	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8000847	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526459	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534981	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9534986	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9534995	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs956169	0.88[ASN][1000 genomes]
rs9591144	0.88[ASN][1000 genomes]
rs9591146	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9595871	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1047140	chr13:48703732-48765860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541767	chr13:48703732-48765860	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48735400-48743600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:48735800-48740600	Weak transcription	NHEK	skin
3	chr13:48735800-48740800	Weak transcription	HMEC	breast
4	chr13:48736200-48740600	Weak transcription	Esophagus	oesophagus
5	chr13:48737800-48740600	Weak transcription	Fetal Lung	lung
6	chr13:48738200-48746200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr13:48739600-48740200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr13:48739600-48741200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:48739800-48740800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr13:48740000-48741000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links