Variant report

Variant	rs17072549
Chromosome Location	chr13:29599322-29599323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17072559	1.00[EUR][1000 genomes]
rs17072884	1.00[EUR][1000 genomes]
rs326505	1.00[EUR][1000 genomes]
rs55987417	1.00[EUR][1000 genomes]
rs56027878	1.00[EUR][1000 genomes]
rs7327807	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7337727	1.00[EUR][1000 genomes]
rs74045514	1.00[EUR][1000 genomes]
rs7996240	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29597400-29600400	Weak transcription	Pancreas	Pancrea
3	chr13:29599000-29599400	Enhancers	Aorta	Aorta
4	chr13:29599000-29599800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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