Variant report

Variant	rs7327807
Chromosome Location	chr13:29597890-29597891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:29597729-29597929	K562	blood:	n/a	n/a
2	USF2	chr13:29597890-29598159	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:29597851-29597901	ECC-1	luminal epithelium:	n/a
2	chr13:29597851-29597901	HRCEpiC	kidney:	n/a
3	chr13:29597851-29597901	NH-A	brain:	n/a
4	chr13:29597851-29597901	GM12892	blood:	n/a
5	chr13:29597851-29597901	MCF-7	breast:	n/a
6	chr13:29597851-29597901	Caco-2	colon:	n/a
7	chr13:29597851-29597901	HEK293	kidney:	embryo
8	chr13:29597851-29597901	GM12878	blood:	n/a
9	chr13:29597851-29597901	HRPEpiC	eye:	n/a
10	chr13:29597851-29597901	AoSMC	blood vessel:	n/a
11	chr13:29597851-29597901	U87	brain:	n/a
12	chr13:29597851-29597901	HepG2	liver:	n/a
13	chr13:29597851-29597901	SKMC	muscle:	n/a
14	chr13:29597851-29597901	GM12891	blood:	n/a
15	chr13:29597851-29597901	GM06990	blood:	n/a
16	chr13:29597851-29597901	LNCaP	prostate:	n/a
17	chr13:29597851-29597901	ProgFib	skin:	n/a
18	chr13:29597851-29597901	HIPEpiC	eye:	n/a
19	chr13:29597851-29597901	T-47D	breast:	n/a
20	chr13:29597851-29597901	NB4	blood:	n/a
21	chr13:29597851-29597901	PrEC	prostate:	n/a
22	chr13:29597851-29597901	CMK	blood:	n/a
23	chr13:29597851-29597901	HNPCEpiC	eye:	n/a
24	chr13:29597851-29597901	IMR90	lung:	fetal
25	chr13:29597851-29597901	RPTEC	kidney:	n/a
26	chr13:29597851-29597901	Jurkat	blood:	n/a
27	chr13:29597851-29597901	GM19239	blood:	n/a
28	chr13:29597851-29597901	SK-N-SH_RA	brain:	n/a
29	chr13:29597851-29597901	AG09319	gingival:	n/a
30	chr13:29597851-29597901	Hela-S3	cervix:	n/a
31	chr13:29597851-29597901	H1-hESC	embryonic stem cell:	embryo
32	chr13:29597851-29597901	AG04450	lung:	fetal
33	chr13:29597851-29597901	HCF	heart:	n/a
34	chr13:29597851-29597901	HCM	heart:	n/a
35	chr13:29597851-29597901	A549	lung:	n/a
36	chr13:29597851-29597901	HPAEpiC	pulmonary alveolar:	n/a
37	chr13:29597851-29597901	HCPEpiC	choroid plexus:	n/a
38	chr13:29597851-29597901	AG04449	skin:	fetal
39	chr13:29597851-29597901	NT2-D1	testis:	n/a
40	chr13:29597851-29597901	HRE	kidney:	n/a
41	chr13:29597851-29597901	HCT-116	colon:	n/a
42	chr13:29597851-29597901	HMEC	breast:	n/a
43	chr13:29597851-29597901	HEEpiC	esophagus:	n/a
44	chr13:29597851-29597901	ovcar-3	ovarian:	n/a
45	chr13:29597851-29597901	AG09309	skin:	n/a
46	chr13:29597851-29597901	HUVEC	blood vessel:	n/a
47	chr13:29597851-29597901	SAEC	small airway:	n/a
48	chr13:29597851-29597901	HAEpiC	amniotic membrane:	n/a
49	chr13:29597851-29597901	HL-60	blood:	n/a
50	chr13:29597851-29597901	K562	blood:	n/a

No data

Variant related genes	Relation type
MTUS2	TF binding region
MTUS2	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17072549	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17072559	1.00[EUR][1000 genomes]
rs17072884	1.00[EUR][1000 genomes]
rs326505	1.00[EUR][1000 genomes]
rs55987417	1.00[EUR][1000 genomes]
rs56027878	1.00[EUR][1000 genomes]
rs7337727	1.00[EUR][1000 genomes]
rs74045514	1.00[EUR][1000 genomes]
rs7996240	1.00[EUR][1000 genomes]
rs7998076	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29589400-29599000	Weak transcription	Aorta	Aorta
3	chr13:29596400-29598400	Weak transcription	Fetal Heart	heart
4	chr13:29597400-29600400	Weak transcription	Pancreas	Pancrea

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