Variant report

Variant	rs17073120
Chromosome Location	chr13:29814912-29814913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC7A1-2	chr13:29814597-29815023	NONHSAT032724

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17072891	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072909	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2992387	1.00[AMR][1000 genomes]
rs59851018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60075430	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60351466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61365746	1.00[AMR][1000 genomes]
rs7139933	1.00[AMR][1000 genomes]
rs7317620	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7322995	0.91[YRI][hapmap]
rs7325573	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7328204	1.00[AMR][1000 genomes]
rs7329385	0.91[YRI][hapmap]
rs7332404	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7333330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334265	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7337486	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7339027	0.91[YRI][hapmap]
rs73445195	1.00[AMR][1000 genomes]
rs73445200	1.00[AMR][1000 genomes]
rs73447205	1.00[AMR][1000 genomes]
rs73447209	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447239	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447246	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447249	1.00[AMR][1000 genomes]
rs73447253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447256	1.00[AMR][1000 genomes]
rs73449314	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449318	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449378	1.00[AMR][1000 genomes]
rs73449379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7995580	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997357	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv899958	chr13:29752497-29820422	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv899959	chr13:29752497-29832613	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3433497	chr13:29786122-29917797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3347671	chr13:29786276-29922806	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3371345	chr13:29786316-29922762	Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29807800-29820400	Weak transcription	Aorta	Aorta
2	chr13:29811600-29815200	Weak transcription	Fetal Thymus	thymus
3	chr13:29813600-29815000	Flanking Active TSS	Dnd41	blood

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