Variant report

Variant	rs17073389
Chromosome Location	chr13:30017318-30017319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17073395	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17073412	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17073418	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17073426	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17658712	1.00[CEU][hapmap]
rs17658743	1.00[CEU][hapmap]
rs1986717	1.00[CEU][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap]
rs2388077	0.83[EUR][1000 genomes]
rs3923361	0.83[EUR][1000 genomes]
rs4379923	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4512950	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4616138	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs56091401	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56394814	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57762277	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57959769	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58044581	0.83[EUR][1000 genomes]
rs58848825	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60642819	0.83[EUR][1000 genomes]
rs60977472	0.83[EUR][1000 genomes]
rs61139396	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61281018	0.85[EUR][1000 genomes]
rs7317720	0.83[EUR][1000 genomes]
rs7335252	1.00[CEU][hapmap]
rs7336242	1.00[CEU][hapmap]
rs7339339	0.83[EUR][1000 genomes]
rs73444071	0.83[EUR][1000 genomes]
rs73444097	0.83[EUR][1000 genomes]
rs73444099	0.83[EUR][1000 genomes]
rs73444101	0.83[EUR][1000 genomes]
rs74042075	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74042084	0.83[EUR][1000 genomes]
rs74042086	0.83[EUR][1000 genomes]
rs74042090	0.83[EUR][1000 genomes]
rs7999813	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs8002833	1.00[CEU][hapmap]
rs8003005	1.00[CEU][hapmap]
rs9508462	0.83[EUR][1000 genomes]
rs9508477	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30013200-30017400	Weak transcription	Psoas Muscle	Psoas
2	chr13:30013800-30019000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:30014200-30020600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:30014400-30031400	Weak transcription	Hela-S3	cervix
5	chr13:30015000-30018000	Enhancers	Left Ventricle	heart
6	chr13:30015200-30054800	Weak transcription	Dnd41	blood
7	chr13:30015400-30018000	Strong transcription	Stomach Smooth Muscle	stomach
8	chr13:30015800-30018000	Enhancers	Right Atrium	heart
9	chr13:30015800-30018200	Enhancers	Fetal Muscle Leg	muscle
10	chr13:30016000-30017800	Enhancers	Fetal Muscle Trunk	muscle
11	chr13:30016000-30028600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:30016400-30017800	Weak transcription	Fetal Brain Male	brain
13	chr13:30016800-30017600	Enhancers	Right Ventricle	heart
14	chr13:30017000-30017400	Weak transcription	Esophagus	oesophagus
15	chr13:30017200-30017400	Flanking Active TSS	Fetal Heart	heart
16	chr13:30017200-30017800	Enhancers	Aorta	Aorta

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