Variant report

Variant	rs7339339
Chromosome Location	chr13:30028627-30028628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30019008..30022354-chr13:30026041..30029936,4	K562	blood:
2	chr13:30023123..30025687-chr13:30027980..30030025,2	K562	blood:
3	chr13:30007620..30009722-chr13:30028117..30030313,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs17073389	0.83[EUR][1000 genomes]
rs17073395	1.00[EUR][1000 genomes]
rs17073412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073426	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17658712	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17658743	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1986717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2388077	1.00[EUR][1000 genomes]
rs3923361	1.00[EUR][1000 genomes]
rs4379923	1.00[EUR][1000 genomes]
rs4512950	1.00[EUR][1000 genomes]
rs4616138	0.97[EUR][1000 genomes]
rs4769742	0.81[EUR][1000 genomes]
rs55842638	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56091401	0.97[EUR][1000 genomes]
rs56394814	1.00[EUR][1000 genomes]
rs57161860	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57762277	1.00[EUR][1000 genomes]
rs57959769	1.00[EUR][1000 genomes]
rs57993747	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58044581	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58848825	1.00[EUR][1000 genomes]
rs59698584	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60642819	1.00[EUR][1000 genomes]
rs60977472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61139396	0.97[EUR][1000 genomes]
rs61281018	0.97[EUR][1000 genomes]
rs71090257	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7317720	1.00[EUR][1000 genomes]
rs7335252	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7336242	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73444071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73444079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73444086	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73444091	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73444093	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73444097	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73444099	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73444101	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73446103	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73446106	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73446109	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73446111	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74042075	0.95[EUR][1000 genomes]
rs74042084	1.00[EUR][1000 genomes]
rs74042085	0.81[EUR][1000 genomes]
rs74042086	1.00[EUR][1000 genomes]
rs74042090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74042093	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7999813	1.00[EUR][1000 genomes]
rs8002833	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8003005	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9508462	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30014400-30031400	Weak transcription	Hela-S3	cervix
2	chr13:30015200-30054800	Weak transcription	Dnd41	blood
3	chr13:30018600-30029000	Weak transcription	Esophagus	oesophagus
4	chr13:30023200-30029200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:30024400-30029000	Weak transcription	Left Ventricle	heart
6	chr13:30024600-30029000	Weak transcription	Right Ventricle	heart
7	chr13:30027000-30032000	Enhancers	Fetal Heart	heart
8	chr13:30027200-30029200	Enhancers	K562	blood
9	chr13:30027800-30028800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:30027800-30030400	Weak transcription	HSMMtube	muscle
11	chr13:30028000-30029200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:30028000-30030600	Weak transcription	Ovary	ovary
13	chr13:30028000-30030600	Weak transcription	NHDF-Ad	bronchial
14	chr13:30028200-30029200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr13:30028600-30028800	Enhancers	Primary hematopoietic stem cells	blood
16	chr13:30028600-30029200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr13:30028600-30029200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:30028600-30029200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr13:30028600-30029200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr13:30028600-30029400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr13:30028600-30029400	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:30028600-30029600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:30028600-30029600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:30028600-30029800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:30028600-30029800	Enhancers	NHEK	skin
26	chr13:30028600-30034800	Enhancers	HMEC	breast

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