Variant report

Variant	rs17073508
Chromosome Location	chr13:30051527-30051528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17073440	1.00[AMR][1000 genomes]
rs17073450	1.00[AMR][1000 genomes]
rs17073453	1.00[AMR][1000 genomes]
rs17073454	1.00[AMR][1000 genomes]
rs17073456	1.00[AMR][1000 genomes]
rs17073458	1.00[AMR][1000 genomes]
rs17073460	1.00[AMR][1000 genomes]
rs17073469	1.00[AMR][1000 genomes]
rs4503648	1.00[AMR][1000 genomes]
rs57888514	1.00[AMR][1000 genomes]
rs59895574	1.00[AMR][1000 genomes]
rs59903271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61119342	1.00[AMR][1000 genomes]
rs73444083	1.00[AMR][1000 genomes]
rs73444089	1.00[AMR][1000 genomes]
rs73446117	1.00[AMR][1000 genomes]
rs73446120	1.00[AMR][1000 genomes]
rs73446124	1.00[AMR][1000 genomes]
rs73446125	1.00[AMR][1000 genomes]
rs73446128	1.00[AMR][1000 genomes]
rs73446130	1.00[AMR][1000 genomes]
rs73446133	1.00[AMR][1000 genomes]
rs73446135	1.00[AMR][1000 genomes]
rs73446137	1.00[AMR][1000 genomes]
rs73446140	1.00[AMR][1000 genomes]
rs73446144	1.00[AMR][1000 genomes]
rs73446147	1.00[AMR][1000 genomes]
rs73446154	1.00[AMR][1000 genomes]
rs73446158	1.00[AMR][1000 genomes]
rs73446160	1.00[AMR][1000 genomes]
rs73446162	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044806	1.00[AMR][1000 genomes]
rs74044808	1.00[AMR][1000 genomes]
rs7984642	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7985018	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7985850	1.00[AMR][1000 genomes]
rs7986480	1.00[AMR][1000 genomes]
rs7986808	1.00[AMR][1000 genomes]
rs7987266	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30015200-30054800	Weak transcription	Dnd41	blood
2	chr13:30040000-30054200	Weak transcription	Aorta	Aorta
3	chr13:30040400-30052800	Weak transcription	Left Ventricle	heart
4	chr13:30040600-30053400	Weak transcription	Right Ventricle	heart
5	chr13:30041400-30054000	Weak transcription	Fetal Muscle Leg	muscle
6	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:30050400-30053800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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