Variant report

Variant	rs73446162
Chromosome Location	chr13:30043298-30043299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17073440	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073446	0.82[AFR][1000 genomes]
rs17073450	1.00[AMR][1000 genomes]
rs17073453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073454	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073456	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073458	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073464	0.81[AFR][1000 genomes]
rs17073469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17073508	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4503648	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57888514	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59895574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59903271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61119342	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444083	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444089	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446117	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446120	1.00[AMR][1000 genomes]
rs73446124	1.00[AMR][1000 genomes]
rs73446125	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446128	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446130	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446133	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446140	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446147	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446154	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044806	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044808	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7985018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7985850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7986480	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7986808	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987266	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30015200-30054800	Weak transcription	Dnd41	blood
2	chr13:30040000-30054200	Weak transcription	Aorta	Aorta
3	chr13:30040400-30052800	Weak transcription	Left Ventricle	heart
4	chr13:30040600-30045600	Weak transcription	K562	blood
5	chr13:30040600-30053400	Weak transcription	Right Ventricle	heart
6	chr13:30041400-30054000	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:30041600-30045800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:30042000-30045800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:30042200-30045600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr13:30042200-30046000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:30042400-30045600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:30043000-30043400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr13:30043000-30044200	Weak transcription	Fetal Heart	heart
14	chr13:30043200-30043400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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