Variant report

Variant	rs17074746
Chromosome Location	chr6:145360102-145360103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17074743	0.92[EUR][1000 genomes]
rs55792212	0.80[EUR][1000 genomes]
rs55930967	0.92[EUR][1000 genomes]
rs56367325	0.92[EUR][1000 genomes]
rs58174787	0.83[EUR][1000 genomes]
rs58933357	0.92[EUR][1000 genomes]
rs60551989	0.92[EUR][1000 genomes]
rs6919579	0.80[EUR][1000 genomes]
rs73779524	0.83[EUR][1000 genomes]
rs73779526	0.83[EUR][1000 genomes]
rs73779527	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73779528	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73779530	0.80[EUR][1000 genomes]
rs7760669	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17074746	MAP4K4	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145358600-145362000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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