Variant report

Variant	rs56367325
Chromosome Location	chr6:145357748-145357749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17074743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074746	0.92[EUR][1000 genomes]
rs55792212	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56401840	1.00[ASN][1000 genomes]
rs57807869	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58174787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58933357	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919579	0.87[EUR][1000 genomes]
rs73779524	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779526	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779527	0.85[EUR][1000 genomes]
rs73779528	0.85[EUR][1000 genomes]
rs73779530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760669	0.83[EUR][1000 genomes]
rs7765603	1.00[ASN][1000 genomes]
rs7765650	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145356200-145357800	Weak transcription	NHLF	lung
2	chr6:145357000-145357800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:145357200-145357800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:145357200-145357800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:145357200-145357800	Enhancers	Right Ventricle	heart
6	chr6:145357200-145357800	Enhancers	NHDF-Ad	bronchial
7	chr6:145357200-145358000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:145357600-145357800	Enhancers	Right Atrium	heart
9	chr6:145357600-145358600	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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