Variant report

Variant	rs56401840
Chromosome Location	chr6:145384513-145384514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17074743	1.00[ASN][1000 genomes]
rs55792212	1.00[ASN][1000 genomes]
rs55930967	1.00[ASN][1000 genomes]
rs56313464	0.93[EUR][1000 genomes]
rs56367325	1.00[ASN][1000 genomes]
rs57807869	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58174787	1.00[ASN][1000 genomes]
rs58933357	1.00[ASN][1000 genomes]
rs60551989	1.00[ASN][1000 genomes]
rs73779524	1.00[ASN][1000 genomes]
rs73779526	1.00[ASN][1000 genomes]
rs73779530	1.00[ASN][1000 genomes]
rs7760669	0.83[AMR][1000 genomes]
rs7765603	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765650	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145383400-145385000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:145383600-145388200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:145384000-145385200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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