Variant report

Variant	rs17075302
Chromosome Location	chr13:51658912-51658913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11840707	1.00[CEU][hapmap]
rs1475378	1.00[MEX][hapmap]
rs17075305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075308	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075310	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075316	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57338993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525359	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61029100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61258906	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61423497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323479	1.00[MEX][hapmap]
rs73485873	1.00[EUR][1000 genomes]
rs74085507	1.00[EUR][1000 genomes]
rs9596489	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51652800-51667000	Weak transcription	Right Atrium	heart
2	chr13:51654800-51671600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:51655000-51671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:51656200-51670400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:51656400-51671200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:51656600-51665000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:51657600-51659800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:51657800-51659800	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr13:51657800-51666000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:51658000-51659200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:51658000-51672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:51658200-51670600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr13:51658400-51659400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr13:51658400-51671200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:51658400-51676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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