Variant report

Variant	rs61258906
Chromosome Location	chr13:51648565-51648566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17075302	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075305	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075308	1.00[EUR][1000 genomes]
rs17075310	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075312	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075314	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075316	1.00[EUR][1000 genomes]
rs17075318	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57338993	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525359	1.00[EUR][1000 genomes]
rs61029100	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61423497	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485873	1.00[EUR][1000 genomes]
rs74085507	1.00[EUR][1000 genomes]
rs9596489	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links