Variant report

Variant	rs17075850
Chromosome Location	chr6:146607534-146607535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1016600	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2223773	0.91[EUR][1000 genomes]
rs2300617	0.98[EUR][1000 genomes]
rs362834	0.93[EUR][1000 genomes]
rs362946	0.98[EUR][1000 genomes]
rs362985	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4479958	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502955	0.86[JPT][hapmap]
rs4538735	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4551188	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6570752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6570753	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6570754	0.98[EUR][1000 genomes]
rs6570755	0.98[EUR][1000 genomes]
rs6909071	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6921530	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6929180	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9497519	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146604200-146608600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:146607000-146607800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:146607000-146609600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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