Variant report
| Variant | rs4551188 |
|---|---|
| Chromosome Location | chr6:146488167-146488168 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs12527140 | 0.98[EUR][1000 genomes] |
| rs17075748 | 0.95[ASN][1000 genomes] |
| rs1997767 | 0.98[EUR][1000 genomes] |
| rs2038133 | 0.98[EUR][1000 genomes] |
| rs2056996 | 0.95[ASN][1000 genomes] |
| rs2143324 | 0.95[EUR][1000 genomes] |
| rs2179509 | 0.98[EUR][1000 genomes] |
| rs2206517 | 0.98[EUR][1000 genomes] |
| rs4130632 | 0.98[EUR][1000 genomes] |
| rs4502955 | 0.86[JPT][hapmap] |
| rs4607452 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs4629704 | 0.93[EUR][1000 genomes] |
| rs4895689 | 0.98[EUR][1000 genomes] |
| rs4895694 | 0.93[ASN][1000 genomes] |
| rs4896862 | 0.86[ASN][1000 genomes] |
| rs57501950 | 0.91[ASN][1000 genomes] |
| rs6570739 | 0.89[EUR][1000 genomes] |
| rs6570748 | 0.91[ASN][1000 genomes] |
| rs6570752 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6914239 | 0.91[ASN][1000 genomes] |
| rs7772919 | 0.98[EUR][1000 genomes] |
| rs9322050 | 1.00[CEU][hapmap] |
| rs9322051 | 0.98[EUR][1000 genomes] |
| rs9485054 | 0.98[EUR][1000 genomes] |
| rs9485055 | 0.97[EUR][1000 genomes] |
| rs9497461 | 0.93[EUR][1000 genomes] |
| rs9497469 | 0.98[EUR][1000 genomes] |
| rs9497471 | 0.98[EUR][1000 genomes] |
| rs9497472 | 0.82[EUR][1000 genomes] |
| rs9497474 | 0.98[EUR][1000 genomes] |
| rs9497484 | 0.95[ASN][1000 genomes] |
| rs9497500 | 0.91[ASN][1000 genomes] |
| rs9497501 | 0.91[ASN][1000 genomes] |
| rs9497515 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604839 | chr6:146305810-146828922 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830836 | chr6:146423405-146598983 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:146487400-146488800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
