Variant report

Variant	rs4896862
Chromosome Location	chr6:146558454-146558455
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121484765..121486916-chr6:146556880..146559469,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17075748	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2056995	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2056996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2056997	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2206516	0.95[EUR][1000 genomes]
rs2223587	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2328729	0.95[EUR][1000 genomes]
rs28368752	0.95[EUR][1000 genomes]
rs28734879	0.95[EUR][1000 genomes]
rs362985	1.00[CEU][hapmap]
rs4502955	0.86[JPT][hapmap]
rs4551188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4895693	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4895694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896861	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs57501950	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58938823	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59450158	0.95[EUR][1000 genomes]
rs6570740	0.95[EUR][1000 genomes]
rs6570747	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6570748	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899461	0.95[EUR][1000 genomes]
rs6900892	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6914239	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6941146	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7744909	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9497484	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497515	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs990519	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146555400-146561400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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