Variant report

Variant	rs6941146
Chromosome Location	chr6:146546604-146546605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146541745..146544017-chr6:146545703..146548132,3	K562	blood:
2	chr6:146541745..146543405-chr6:146546212..146548132,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12527140	0.87[ASN][1000 genomes]
rs17075748	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1997767	0.87[ASN][1000 genomes]
rs2038133	0.85[ASN][1000 genomes]
rs2056995	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2056996	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2056997	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2143324	0.87[ASN][1000 genomes]
rs2179509	0.87[ASN][1000 genomes]
rs2206516	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2206517	0.87[ASN][1000 genomes]
rs2223587	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328729	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28368752	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28734879	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs362831	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs362985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4130632	0.87[ASN][1000 genomes]
rs4607452	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs4629704	0.87[ASN][1000 genomes]
rs4895689	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4895693	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895694	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4896861	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896862	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs57501950	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs58938823	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59450158	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570739	0.87[ASN][1000 genomes]
rs6570740	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570747	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570748	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6570752	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs6899461	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900892	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6914239	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7744909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772919	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9322050	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs9322051	0.87[ASN][1000 genomes]
rs9485054	0.87[ASN][1000 genomes]
rs9485055	0.87[ASN][1000 genomes]
rs9497461	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9497469	0.87[ASN][1000 genomes]
rs9497471	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9497472	0.83[ASN][1000 genomes]
rs9497474	0.87[ASN][1000 genomes]
rs9497484	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9497500	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9497501	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9497515	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs990519	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146545600-146547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:146546600-146547000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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