Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1016600	0.96[ASN][1000 genomes]
rs1555084	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2223773	0.92[ASN][1000 genomes]
rs2300617	0.99[ASN][1000 genomes]
rs362834	0.95[ASN][1000 genomes]
rs362835	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs362946	0.99[ASN][1000 genomes]
rs362962	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4538735	0.96[ASN][1000 genomes]
rs4607452	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs6570747	0.81[ASN][1000 genomes]
rs6570753	0.96[ASN][1000 genomes]
rs6570754	0.96[ASN][1000 genomes]
rs6570755	0.99[ASN][1000 genomes]
rs6909071	0.96[ASN][1000 genomes]
rs6921530	0.96[ASN][1000 genomes]
rs6929180	0.96[ASN][1000 genomes]
rs6942277	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767227	0.91[ASN][1000 genomes]
rs9322050	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs941901	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs362831	LRP11	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146657000-146661600	Enhancers	HUVEC	blood vessel
2	chr6:146658000-146660800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:146658200-146661000	Enhancers	Psoas Muscle	Psoas
4	chr6:146658400-146660800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:146658400-146660800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:146659400-146660800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:146659600-146661400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:146659800-146660800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:146659800-146660800	Weak transcription	Hela-S3	cervix
10	chr6:146660000-146660200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:146660000-146660600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr6:146660000-146660600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:146660000-146661200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:146660000-146661600	Enhancers	Cortex derived primary cultured neurospheres	brain

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