Variant report

Variant	rs6570747
Chromosome Location	chr6:146577335-146577336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1016600	0.85[ASN][1000 genomes]
rs1555084	0.83[ASN][1000 genomes]
rs17075748	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2056995	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2056996	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2056997	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2206516	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2223587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2300617	0.82[ASN][1000 genomes]
rs2328729	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28368752	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28734879	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs362831	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs362946	0.82[ASN][1000 genomes]
rs362962	0.81[ASN][1000 genomes]
rs362985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4502955	0.81[TSI][hapmap]
rs4538735	0.85[ASN][1000 genomes]
rs4551188	0.88[TSI][hapmap]
rs4607452	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs4895689	0.81[AMR][1000 genomes]
rs4895693	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895694	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4896861	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4896862	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57501950	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs58938823	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59450158	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570740	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570748	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6570752	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs6570753	0.85[ASN][1000 genomes]
rs6570754	0.85[ASN][1000 genomes]
rs6570755	0.82[ASN][1000 genomes]
rs6899461	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6900892	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6909071	0.85[ASN][1000 genomes]
rs6914239	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6921530	0.85[ASN][1000 genomes]
rs6929180	0.85[ASN][1000 genomes]
rs6941146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6942277	0.83[ASN][1000 genomes]
rs7744909	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772919	0.81[AMR][1000 genomes]
rs9322050	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs941901	0.81[ASN][1000 genomes]
rs9497461	0.81[AMR][1000 genomes]
rs9497471	0.81[AMR][1000 genomes]
rs9497484	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9497500	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9497501	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9497515	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs990519	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146575600-146579800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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