Variant report

Variant	rs28368752
Chromosome Location	chr6:146520929-146520930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12527140	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17075748	0.95[EUR][1000 genomes]
rs1997767	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2038133	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2056995	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056996	0.95[EUR][1000 genomes]
rs2056997	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2143324	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2179509	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2206516	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206517	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2223587	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2328729	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28734879	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130632	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4607452	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4629704	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4895689	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895693	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4895694	0.95[EUR][1000 genomes]
rs4896861	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896862	0.95[EUR][1000 genomes]
rs57501950	0.95[EUR][1000 genomes]
rs58938823	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59450158	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570739	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6570740	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570747	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570748	0.91[EUR][1000 genomes]
rs6570752	0.82[EUR][1000 genomes]
rs6899461	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900892	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914239	0.87[EUR][1000 genomes]
rs6941146	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744909	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772919	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9322051	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9485054	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9485055	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9497461	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497469	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497471	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497472	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9497474	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497484	0.95[EUR][1000 genomes]
rs9497500	0.95[EUR][1000 genomes]
rs9497501	0.95[EUR][1000 genomes]
rs9497515	0.91[EUR][1000 genomes]
rs990519	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146515400-146521000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:146520600-146521800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:146520600-146522200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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