Variant report

Variant	rs4629704
Chromosome Location	chr6:146475319-146475320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12527140	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1997767	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038133	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2056995	0.88[ASN][1000 genomes]
rs2056997	0.88[ASN][1000 genomes]
rs2143324	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179509	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2206516	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2206517	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2223587	0.86[ASN][1000 genomes]
rs2328729	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28368752	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28734879	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs362831	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs362985	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs4130632	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4551188	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4607452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895689	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895693	0.88[ASN][1000 genomes]
rs4896861	0.87[ASN][1000 genomes]
rs58938823	0.86[ASN][1000 genomes]
rs59450158	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6570739	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570740	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6899461	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6900892	0.88[ASN][1000 genomes]
rs6941146	0.87[ASN][1000 genomes]
rs7744909	0.83[ASN][1000 genomes]
rs7772919	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9322051	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9485054	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485055	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497461	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497469	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497471	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497472	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497474	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs990519	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830836	chr6:146423405-146598983	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146471200-146475400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:146474600-146475800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:146474800-146475600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:146475000-146475600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:146475000-146475600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:146475000-146475800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:146475200-146475800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:146475200-146475800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:146475200-146475800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:146475200-146476000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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