Variant report

Variant	rs17075881
Chromosome Location	chr13:52255877-52255878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52025681..52027963-chr13:52254929..52257312,2	MCF-7	breast:
2	chr13:52025379..52027248-chr13:52255384..52258045,2	MCF-7	breast:
3	chr13:52255342..52256030-chr17:40828552..40829291,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000068137	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17075900	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4625625	1.00[YRI][hapmap]
rs7332603	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332922	0.82[YRI][hapmap]
rs7993522	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9568650	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52220400-52259000	Weak transcription	Thymus	Thymus
2	chr13:52232200-52261800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:52232800-52256400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr13:52234000-52277800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:52234200-52258800	Weak transcription	Adipose Nuclei	Adipose
6	chr13:52234200-52263200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr13:52234800-52257600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:52237200-52257400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:52237200-52261400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:52238600-52256800	Weak transcription	Fetal Muscle Leg	muscle
11	chr13:52238600-52259400	Weak transcription	Fetal Stomach	stomach
12	chr13:52239200-52257400	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:52239200-52263200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:52244400-52257000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:52244600-52257000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:52244800-52262200	Weak transcription	Ovary	ovary
17	chr13:52247200-52277400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr13:52247400-52257000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:52247600-52261600	Weak transcription	GM12878-XiMat	blood
20	chr13:52247600-52262000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr13:52247600-52300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr13:52247600-52300200	Weak transcription	Fetal Lung	lung
23	chr13:52247800-52262200	Weak transcription	Spleen	Spleen
24	chr13:52248600-52257600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:52248800-52257800	Weak transcription	Aorta	Aorta
26	chr13:52249000-52257600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr13:52249000-52257600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:52249400-52307600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr13:52249800-52257600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr13:52249800-52257600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr13:52249800-52258000	Weak transcription	Brain Substantia Nigra	brain
32	chr13:52249800-52261400	Weak transcription	Brain Anterior Caudate	brain
33	chr13:52249800-52262000	Weak transcription	Brain Angular Gyrus	brain
34	chr13:52250000-52257600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr13:52250000-52262000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:52250400-52257600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr13:52250400-52257600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr13:52250400-52261800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:52250600-52257600	Weak transcription	Gastric	stomach
40	chr13:52250600-52263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:52250600-52263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:52251000-52261200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr13:52251200-52269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:52252800-52257000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:52253200-52256400	Weak transcription	Liver	Liver
46	chr13:52253200-52259400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr13:52253400-52257000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr13:52253400-52259400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr13:52253600-52256400	Genic enhancers	HSMM	muscle
50	chr13:52253600-52262000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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