Variant report

Variant	rs7332603
Chromosome Location	chr13:52134450-52134451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52131962..52135088-chr13:52156352..52158320,3	MCF-7	breast:
2	chr13:52024546..52028811-chr13:52131702..52137649,7	MCF-7	breast:
3	chr13:52093719..52095925-chr13:52134002..52136713,2	MCF-7	breast:
4	chr13:52026353..52029018-chr13:52131265..52135290,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17075881	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075900	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4625625	1.00[YRI][hapmap]
rs7332922	0.82[YRI][hapmap]
rs7993522	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9568650	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52131000-52138800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:52132200-52135200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:52132600-52135800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:52133200-52136200	Weak transcription	HSMMtube	muscle
5	chr13:52133400-52138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:52133600-52137800	Weak transcription	Hela-S3	cervix
7	chr13:52134000-52134800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:52134000-52135400	Enhancers	Primary hematopoietic stem cells	blood
9	chr13:52134000-52135600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr13:52134000-52135600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:52134000-52136800	Enhancers	Primary B cells from cord blood	blood
12	chr13:52134000-52136800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:52134000-52137000	Enhancers	Primary B cells from peripheral blood	blood
14	chr13:52134000-52137000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:52134200-52134600	Flanking Active TSS	GM12878-XiMat	blood
16	chr13:52134200-52134800	Enhancers	Primary T cells from cord blood	blood
17	chr13:52134200-52137000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr13:52134400-52134600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:52134400-52134800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr13:52134400-52134800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links