Variant report

Variant	rs17076019
Chromosome Location	chr6:114599907-114599908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12662780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663097	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076012	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56411043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726917	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954564	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954581	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956214	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956220	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956225	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320488	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374446	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374448	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384896	0.90[EUR][1000 genomes]
rs9387199	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400704	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400706	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400709	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488355	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv33752	chr6:114557760-114602482	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114577000-114603000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:114591400-114602600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:114596200-114608400	Weak transcription	HepG2	liver
4	chr6:114596800-114600200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:114598000-114600200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:114598000-114600400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:114598000-114600400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:114598000-114600400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:114598000-114605200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:114598800-114600000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:114599000-114600200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:114599000-114600200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:114599200-114600200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:114599200-114602400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:114599600-114600000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:114599600-114600000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:114599600-114600000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:114599600-114600000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:114599600-114600000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:114599800-114600000	Enhancers	Brain Cingulate Gyrus	brain

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