Variant report

Variant	rs17076347
Chromosome Location	chr6:147148863-147148864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17076349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076351	0.95[AFR][1000 genomes]
rs4343936	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4404785	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4538736	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576284	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576287	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576288	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576301	0.83[AFR][1000 genomes]
rs73576302	0.98[AFR][1000 genomes]
rs73578203	0.98[AFR][1000 genomes]
rs73578204	0.98[AFR][1000 genomes]
rs73578205	0.96[AFR][1000 genomes]
rs73578229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578237	0.82[AFR][1000 genomes]
rs7451402	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7453957	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147141000-147154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:147142200-147154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147148400-147149400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:147148400-147150000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:147148600-147149200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:147148600-147151200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:147148800-147149000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:147148800-147149000	Enhancers	K562	blood
9	chr6:147148800-147149400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:147148800-147150200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:147148800-147150200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:147148800-147150200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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