Variant report
| Variant | rs73578237 |
|---|---|
| Chromosome Location | chr6:147160421-147160422 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SHPRH-2 | chr6:147160003-147163945 | NONHSAT115432 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233452 | Chromatin interaction |
| ENSG00000164506 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs17076347 | 0.82[AFR][1000 genomes] |
| rs17076349 | 0.83[AFR][1000 genomes] |
| rs17076351 | 0.84[AFR][1000 genomes] |
| rs4343936 | 0.83[AFR][1000 genomes] |
| rs4404785 | 0.83[AFR][1000 genomes] |
| rs4538736 | 0.83[AFR][1000 genomes] |
| rs73576271 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73576284 | 0.83[AFR][1000 genomes] |
| rs73576287 | 0.83[AFR][1000 genomes] |
| rs73576288 | 0.83[AFR][1000 genomes] |
| rs73576296 | 0.81[AFR][1000 genomes] |
| rs73576301 | 0.96[AFR][1000 genomes] |
| rs73576302 | 0.82[AFR][1000 genomes] |
| rs73578203 | 0.82[AFR][1000 genomes] |
| rs73578204 | 0.82[AFR][1000 genomes] |
| rs73578205 | 0.81[AFR][1000 genomes] |
| rs73578229 | 0.84[AFR][1000 genomes] |
| rs73578284 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7451402 | 0.83[AFR][1000 genomes] |
| rs7453957 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv2451265 | chr6:147159682-147161265 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147150200-147162200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
