Variant report
| Variant | rs17076629 |
|---|---|
| Chromosome Location | chr6:147419777-147419778 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs17076613 | 1.00[AMR][1000 genomes] |
| rs17076616 | 1.00[AMR][1000 genomes] |
| rs17076618 | 1.00[AMR][1000 genomes] |
| rs17076639 | 1.00[AMR][1000 genomes] |
| rs6900567 | 1.00[AMR][1000 genomes] |
| rs6911338 | 1.00[AMR][1000 genomes] |
| rs73582223 | 1.00[AMR][1000 genomes] |
| rs73582235 | 1.00[AMR][1000 genomes] |
| rs73582237 | 1.00[AMR][1000 genomes] |
| rs73582240 | 1.00[AMR][1000 genomes] |
| rs73582241 | 1.00[AMR][1000 genomes] |
| rs73582243 | 1.00[AMR][1000 genomes] |
| rs7774882 | 1.00[AMR][1000 genomes] |
| rs927670 | 1.00[AMR][1000 genomes] |
| rs927671 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019245 | chr6:147350834-147609776 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv538467 | chr6:147350834-147609776 | Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv886751 | chr6:147354092-147490398 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147419600-147419800 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
