Variant report

Variant	rs927670
Chromosome Location	chr6:147215820-147215821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17076400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076613	1.00[AMR][1000 genomes]
rs17076616	1.00[AMR][1000 genomes]
rs17076618	1.00[AMR][1000 genomes]
rs17076629	1.00[AMR][1000 genomes]
rs4565327	1.00[AMR][1000 genomes]
rs4573104	1.00[AMR][1000 genomes]
rs62434839	0.97[AFR][1000 genomes]
rs6900567	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580236	1.00[AFR][1000 genomes]
rs73582223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774882	1.00[AMR][1000 genomes]
rs927671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147214400-147216400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:147214600-147217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:147215000-147216000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:147215000-147217800	Weak transcription	NHLF	lung
5	chr6:147215000-147219200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:147215200-147217400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147215200-147219600	Flanking Active TSS	K562	blood
8	chr6:147215200-147224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:147215400-147216000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:147215600-147216000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:147215600-147216400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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