Variant report

Variant	rs4565327
Chromosome Location	chr6:147151452-147151453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17076400	1.00[AMR][1000 genomes]
rs4573104	1.00[AMR][1000 genomes]
rs6900567	1.00[AMR][1000 genomes]
rs6911338	1.00[AMR][1000 genomes]
rs6922279	1.00[ASN][1000 genomes]
rs73582223	1.00[AMR][1000 genomes]
rs73582235	1.00[AMR][1000 genomes]
rs73582237	1.00[AMR][1000 genomes]
rs73582240	1.00[AMR][1000 genomes]
rs73582241	1.00[AMR][1000 genomes]
rs73582243	1.00[AMR][1000 genomes]
rs7758882	1.00[ASN][1000 genomes]
rs7774882	1.00[AMR][1000 genomes]
rs927670	1.00[AMR][1000 genomes]
rs927671	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147141000-147154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:147142200-147154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:147149000-147153200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:147149400-147151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:147149400-147153200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:147150000-147153200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:147150200-147151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:147150200-147162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:147151200-147151600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:147151200-147152400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:147151200-147152400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:147151400-147153800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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