Variant report

Variant	rs73580236
Chromosome Location	chr6:147212589-147212590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147204253..147217184-chr6:147521370..147537831,35	K562	blood:
2	chr6:147211953..147214210-chr6:147481502..147484872,3	K562	blood:
3	chr6:147212479..147214139-chr6:147360412..147363401,2	K562	blood:
4	chr6:147210436..147217668-chr6:147521992..147527584,13	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17076400	0.93[AFR][1000 genomes]
rs62434839	0.97[AFR][1000 genomes]
rs6900567	0.83[AFR][1000 genomes]
rs6911338	0.89[AFR][1000 genomes]
rs73582223	1.00[AFR][1000 genomes]
rs73582235	1.00[AFR][1000 genomes]
rs73582237	1.00[AFR][1000 genomes]
rs73582240	1.00[AFR][1000 genomes]
rs73582241	1.00[AFR][1000 genomes]
rs73582243	1.00[AFR][1000 genomes]
rs927670	1.00[AFR][1000 genomes]
rs927671	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv442012	chr6:147210681-147219817	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147207000-147213000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:147209400-147212600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:147209400-147215600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:147209600-147213000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:147210000-147215200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:147210800-147213000	Enhancers	K562	blood
7	chr6:147211800-147214000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:147211800-147214400	Enhancers	HSMM	muscle
9	chr6:147211800-147214600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:147212000-147212600	Enhancers	HSMMtube	muscle
11	chr6:147212000-147213200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:147212000-147214200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:147212000-147215200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:147212000-147215800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:147212200-147212600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:147212200-147214600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:147212400-147212800	Weak transcription	Fetal Lung	lung
18	chr6:147212400-147213000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:147212400-147214200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:147212400-147214400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:147212400-147214400	Enhancers	NHDF-Ad	bronchial
22	chr6:147212400-147215000	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:147212400-147215000	Enhancers	NHLF	lung

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