Variant report

Variant	rs17076982
Chromosome Location	chr8:6317183-6317184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6313067..6315249-chr8:6315975..6317705,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17076856	1.00[EUR][1000 genomes]
rs2442501	1.00[EUR][1000 genomes]
rs2515575	1.00[EUR][1000 genomes]
rs2515578	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv482828	chr8:6182711-6355710	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv890055	chr8:6237397-6351252	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
10	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv890056	chr8:6314486-6343727	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv890057	chr8:6317165-6427868	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6265000-6339200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:6287600-6344400	Weak transcription	Small Intestine	intestine
3	chr8:6301000-6338400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:6302800-6339800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:6303000-6317200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:6303000-6317800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:6303000-6319400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:6303000-6321000	Weak transcription	Psoas Muscle	Psoas
9	chr8:6303000-6321000	Weak transcription	Hela-S3	cervix
10	chr8:6303000-6322800	Weak transcription	Ovary	ovary
11	chr8:6303000-6322800	Weak transcription	Spleen	Spleen
12	chr8:6303000-6325000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:6303000-6325200	Weak transcription	Pancreas	Pancrea
14	chr8:6303000-6338200	Weak transcription	Gastric	stomach
15	chr8:6303000-6338200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:6303000-6338400	Weak transcription	Colonic Mucosa	Colon
17	chr8:6303000-6338400	Weak transcription	Right Ventricle	heart
18	chr8:6303000-6339400	Weak transcription	Placenta	Placenta
19	chr8:6303200-6318200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:6303200-6318800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:6303200-6320400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:6303200-6321000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:6303200-6322600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:6303200-6322800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:6303200-6339400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:6303200-6339400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:6303200-6340000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr8:6303400-6320600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:6303400-6320800	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:6303400-6321000	Weak transcription	Brain Anterior Caudate	brain
31	chr8:6303400-6321200	Weak transcription	HUVEC	blood vessel
32	chr8:6303600-6321600	Weak transcription	Brain Germinal Matrix	brain
33	chr8:6303800-6338400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr8:6304000-6322600	Weak transcription	Fetal Brain Female	brain
35	chr8:6304000-6338000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr8:6304400-6318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr8:6304400-6360200	Weak transcription	Esophagus	oesophagus
38	chr8:6304600-6317400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:6304600-6321200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr8:6304800-6317200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:6304800-6323000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr8:6305200-6320000	Weak transcription	Fetal Muscle Leg	muscle
43	chr8:6305800-6317200	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:6305800-6319800	Weak transcription	Primary B cells from cord blood	blood
45	chr8:6305800-6322800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr8:6306000-6317400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:6306000-6317400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr8:6306200-6318200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:6306200-6322800	Weak transcription	Fetal Intestine Large	intestine
50	chr8:6306200-6325400	Weak transcription	K562	blood

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