Variant report

Variant	rs17078695
Chromosome Location	chr3:46235459-46235460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17078660	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs41326147	0.82[AFR][1000 genomes]
rs41366344	0.82[AFR][1000 genomes]
rs41406247	0.96[AFR][1000 genomes]
rs41424051	0.82[AFR][1000 genomes]
rs41461744	0.96[AFR][1000 genomes]
rs41465848	0.86[AFR][1000 genomes]
rs41480548	0.86[AFR][1000 genomes]
rs902761	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46232400-46237000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46234600-46235600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:46234800-46235600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:46235200-46241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:46235400-46247600	Weak transcription	Placenta	Placenta
6	chr3:46235400-46249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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