Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:46204455-46204904	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr3:46204389-46205125	ECC-1	luminal epithelium:	n/a	n/a
3	CTCF	chr3:46204440-46204590	HEK293	kidney:	n/a	n/a
4	ESR1	chr3:46204423-46205046	T-47D	breast:	n/a	chr3:46204649-46204664 chr3:46204670-46204685
5	CTCF	chr3:46204400-46204550	AG09309	skin:	n/a	n/a
6	RAD21	chr3:46204400-46205053	MCF-7	breast:	n/a	n/a
7	EP300	chr3:46204401-46205582	MCF-7	breast:	n/a	n/a
8	ESR1	chr3:46204450-46205539	T-47D	breast:	n/a	chr3:46204649-46204664 chr3:46204670-46204685
9	ESR1	chr3:46204400-46205116	T-47D	breast:	n/a	chr3:46204649-46204664 chr3:46204670-46204685
10	FOSL1	chr3:46204398-46205423	HCT-116	colon:	n/a	n/a
11	SIN3AK20	chr3:46204430-46205583	MCF-7	breast:	n/a	n/a
12	CTCF	chr3:46204465-46204823	K562	blood:	n/a	n/a
13	CTCF	chr3:46204420-46204570	HCM	heart:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46152200..46152791-chr3:46204079..46204942,2	MCF-7	breast:
2	chr3:46202705..46205195-chr3:46247195..46250047,2	MCF-7	breast:

Variant related genes	Relation type
CCR3	TF binding region
ENSG00000163823	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17078660	0.82[AFR][1000 genomes]
rs17078681	1.00[EUR][1000 genomes]
rs17078695	0.82[AFR][1000 genomes]
rs2201148	1.00[EUR][1000 genomes]
rs3136664	1.00[EUR][1000 genomes]
rs3136665	1.00[EUR][1000 genomes]
rs41326147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41364446	1.00[EUR][1000 genomes]
rs41406247	0.86[AFR][1000 genomes]
rs41424051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41461744	0.86[AFR][1000 genomes]
rs41465848	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41480548	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4547740	1.00[EUR][1000 genomes]
rs56102061	1.00[EUR][1000 genomes]
rs56129454	1.00[EUR][1000 genomes]
rs56947484	1.00[EUR][1000 genomes]
rs57522944	1.00[EUR][1000 genomes]
rs58772082	1.00[EUR][1000 genomes]
rs59047782	1.00[EUR][1000 genomes]
rs59654809	1.00[EUR][1000 genomes]
rs61145486	1.00[EUR][1000 genomes]
rs61752589	1.00[EUR][1000 genomes]
rs6765904	0.84[AFR][1000 genomes]
rs6772596	1.00[EUR][1000 genomes]
rs6780714	1.00[EUR][1000 genomes]
rs6793690	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796282	1.00[EUR][1000 genomes]
rs73830670	1.00[EUR][1000 genomes]
rs73833043	1.00[EUR][1000 genomes]
rs73833044	1.00[EUR][1000 genomes]
rs73833047	1.00[EUR][1000 genomes]
rs73833051	1.00[EUR][1000 genomes]
rs73833052	1.00[EUR][1000 genomes]
rs73833053	1.00[EUR][1000 genomes]
rs753110	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46202600-46205400	Weak transcription	Thymus	Thymus
2	chr3:46202800-46206200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:46203400-46204800	Enhancers	Hela-S3	cervix
4	chr3:46203400-46205400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:46203600-46205200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:46203600-46205400	Enhancers	HepG2	liver
7	chr3:46203600-46206200	Enhancers	Placenta	Placenta
8	chr3:46203800-46205400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:46204000-46204600	Enhancers	NHEK	skin
10	chr3:46204000-46205400	Enhancers	Esophagus	oesophagus
11	chr3:46204000-46205400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:46204000-46206000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:46204200-46204800	Enhancers	HMEC	breast
14	chr3:46204400-46204600	Enhancers	Psoas Muscle	Psoas
15	chr3:46204400-46205000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:46204400-46205000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:46204400-46205200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:46204400-46205600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:46204400-46205800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:46204400-46205800	Enhancers	Fetal Thymus	thymus
21	chr3:46204400-46205800	Enhancers	Lung	lung
22	chr3:46204400-46206000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: